Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.22■□□□□ 0.35
LDB3O75112 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 GMCL1P1-201ENST00000463439 1581 ntBASIC17.22■□□□□ 0.35
LDB3O75112 AC135776.1-201ENST00000319817 2481 ntBASIC17.22■□□□□ 0.35
LDB3O75112 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
LDB3O75112 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LDB3O75112 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LDB3O75112 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
LDB3O75112 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LDB3O75112 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LDB3O75112 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LDB3O75112 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
LDB3O75112 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.21■□□□□ 0.35
LDB3O75112 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
LDB3O75112 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.21■□□□□ 0.35
LDB3O75112 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.21■□□□□ 0.35
LDB3O75112 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.21■□□□□ 0.35
LDB3O75112 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB3O75112 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.21■□□□□ 0.35
LDB3O75112 LINC01311-201ENST00000565162 1445 ntBASIC17.21■□□□□ 0.34
LDB3O75112 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LDB3O75112 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.2■□□□□ 0.34
LDB3O75112 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.2■□□□□ 0.34
LDB3O75112 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 MIR1224-201ENST00000408193 85 ntBASIC17.2■□□□□ 0.34
LDB3O75112 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.2■□□□□ 0.34
LDB3O75112 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 AL671277.2-201ENST00000458060 996 ntBASIC17.2■□□□□ 0.34
LDB3O75112 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.2■□□□□ 0.34
LDB3O75112 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.2■□□□□ 0.34
LDB3O75112 AC010331.1-201ENST00000611423 582 ntBASIC17.2■□□□□ 0.34
LDB3O75112 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.2■□□□□ 0.34
LDB3O75112 HYMAI.1-201ENST00000620949 238 ntBASIC17.2■□□□□ 0.34
LDB3O75112 AL590326.2-201ENST00000625139 305 ntBASIC17.2■□□□□ 0.34
LDB3O75112 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.2■□□□□ 0.34
LDB3O75112 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.2■□□□□ 0.34
LDB3O75112 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.2■□□□□ 0.34
LDB3O75112 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 LINC01126-201ENST00000623515 1646 ntBASIC17.2■□□□□ 0.34
LDB3O75112 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 AL024508.2-201ENST00000607749 1894 ntBASIC17.2■□□□□ 0.34
LDB3O75112 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.2■□□□□ 0.34
LDB3O75112 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.2■□□□□ 0.34
LDB3O75112 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.2■□□□□ 0.34
LDB3O75112 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDB3O75112 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LDB3O75112 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.19■□□□□ 0.34
LDB3O75112 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LDB3O75112 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
LDB3O75112 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LDB3O75112 HBZP1-201ENST00000354915 429 ntBASIC17.19■□□□□ 0.34
LDB3O75112 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.19■□□□□ 0.34
LDB3O75112 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDB3O75112 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.19■□□□□ 0.34
LDB3O75112 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.19■□□□□ 0.34
LDB3O75112 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.19■□□□□ 0.34
LDB3O75112 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
LDB3O75112 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms