Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 AC009102.3-201ENST00000623118 1491 ntBASIC17.86■□□□□ 0.45
SDC3O75056 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SDC3O75056 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SDC3O75056 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.86■□□□□ 0.45
SDC3O75056 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SDC3O75056 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.86■□□□□ 0.45
SDC3O75056 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SDC3O75056 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.86■□□□□ 0.45
SDC3O75056 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SDC3O75056 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
SDC3O75056 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SDC3O75056 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SDC3O75056 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.85■□□□□ 0.45
SDC3O75056 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.85■□□□□ 0.45
SDC3O75056 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.85■□□□□ 0.45
SDC3O75056 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.85■□□□□ 0.45
SDC3O75056 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SDC3O75056 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SDC3O75056 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SDC3O75056 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.84■□□□□ 0.45
SDC3O75056 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SDC3O75056 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SDC3O75056 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.84■□□□□ 0.45
SDC3O75056 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 AL591684.3-201ENST00000605187 298 ntBASIC17.84■□□□□ 0.45
SDC3O75056 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SDC3O75056 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.84■□□□□ 0.45
SDC3O75056 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.84■□□□□ 0.45
SDC3O75056 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SDC3O75056 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SDC3O75056 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.83■□□□□ 0.45
SDC3O75056 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
SDC3O75056 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.83■□□□□ 0.45
SDC3O75056 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SDC3O75056 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.83■□□□□ 0.45
SDC3O75056 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SDC3O75056 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.83■□□□□ 0.44
SDC3O75056 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
SDC3O75056 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.83■□□□□ 0.44
SDC3O75056 AL590627.1-203ENST00000421194 1026 ntBASIC17.83■□□□□ 0.44
SDC3O75056 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.83■□□□□ 0.44
SDC3O75056 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SDC3O75056 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 MIR5100-201ENST00000579544 119 ntBASIC17.83■□□□□ 0.44
SDC3O75056 AC087289.5-201ENST00000586076 3175 ntBASIC17.83■□□□□ 0.44
SDC3O75056 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.83■□□□□ 0.44
SDC3O75056 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.83■□□□□ 0.44
SDC3O75056 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SDC3O75056 AL499627.1-201ENST00000569373 2188 ntBASIC17.83■□□□□ 0.44
SDC3O75056 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.83■□□□□ 0.44
SDC3O75056 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SDC3O75056 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SDC3O75056 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.82■□□□□ 0.44
SDC3O75056 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SDC3O75056 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms