Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 AL162741.1-201ENST00000565563 1558 ntBASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 PRELID1P1-202ENST00000567272 903 ntBASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA3Q9Y5H0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 MIR662-201ENST00000384847 95 ntBASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 AL136038.4-201ENST00000603606 1261 ntBASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 AC079602.3-201ENST00000623931 403 ntBASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA3Q9Y5H0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 AL109659.2-201ENST00000606809 1674 ntBASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 AP002383.4-201ENST00000442518 975 ntBASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 AL157888.1-201ENST00000631930 593 ntBASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHGA3Q9Y5H0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 NUS1P1-201ENST00000446295 882 ntBASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PCDHGA3Q9Y5H0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.77■□□□□ 0.43
PCDHGA3Q9Y5H0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.77■□□□□ 0.43
PCDHGA3Q9Y5H0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.77■□□□□ 0.43
PCDHGA3Q9Y5H0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHGA3Q9Y5H0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHGA3Q9Y5H0 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDHGA3Q9Y5H0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms