Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 INGX-201ENST00000359239 846 ntBASIC17.74■□□□□ 0.43
VPS4AQ9UN37 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 AC004980.1-204ENST00000429707 299 ntBASIC17.74■□□□□ 0.43
VPS4AQ9UN37 AC011506.1-201ENST00000474329 610 ntBASIC17.74■□□□□ 0.43
VPS4AQ9UN37 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 AL691432.3-201ENST00000621860 400 ntBASIC17.74■□□□□ 0.43
VPS4AQ9UN37 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 AL121956.5-201ENST00000625261 221 ntBASIC17.74■□□□□ 0.43
VPS4AQ9UN37 AC068587.9-201ENST00000641814 219 ntBASIC17.74■□□□□ 0.43
VPS4AQ9UN37 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS4AQ9UN37 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 MTMR9LP-203ENST00000426597 1545 ntBASIC17.73■□□□□ 0.43
VPS4AQ9UN37 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.73■□□□□ 0.43
VPS4AQ9UN37 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS4AQ9UN37 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 KRT8P3-201ENST00000519669 1449 ntBASIC17.72■□□□□ 0.43
VPS4AQ9UN37 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 KRT8P32-201ENST00000512863 1461 ntBASIC17.72■□□□□ 0.43
VPS4AQ9UN37 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 AL031432.5-201ENST00000641059 760 ntBASIC17.72■□□□□ 0.43
VPS4AQ9UN37 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS4AQ9UN37 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms