Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 PGM5P2-202ENST00000637225 1043 ntBASIC16.93■□□□□ 0.3
CHD8Q9HCK8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CHD8Q9HCK8 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 CRYGEP-201ENST00000412192 528 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 RN7SL692P-201ENST00000464677 288 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 BX005266.1-201ENST00000473402 457 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 HILS1-202ENST00000545329 423 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AC091812.2-201ENST00000619081 385 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 EP400NL-214ENST00000641289 2402 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 PMPCAP1-201ENST00000508114 1576 ntBASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD8Q9HCK8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 AL353135.1-201ENST00000606729 504 ntBASIC16.91■□□□□ 0.3
CHD8Q9HCK8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD8Q9HCK8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 IGLL3P-201ENST00000412472 434 ntBASIC16.9■□□□□ 0.3
CHD8Q9HCK8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 AC010507.1-201ENST00000633895 436 ntBASIC16.9■□□□□ 0.3
CHD8Q9HCK8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.9■□□□□ 0.3
CHD8Q9HCK8 AC068472.1-201ENST00000474589 881 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms