Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
IFT140Q96RY7 AC141586.3-201ENST00000562166 1838 ntBASIC30.19■■■□□ 2.42
IFT140Q96RY7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
IFT140Q96RY7 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
IFT140Q96RY7 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
IFT140Q96RY7 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 PUDP-206ENST00000540122 825 ntTSL 2 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
IFT140Q96RY7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 MIR4751-201ENST00000578027 74 ntBASIC30.19■■■□□ 2.42
IFT140Q96RY7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC30.19■■■□□ 2.42
IFT140Q96RY7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
IFT140Q96RY7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
IFT140Q96RY7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
IFT140Q96RY7 IGLL3P-201ENST00000412472 434 ntBASIC30.18■■■□□ 2.42
IFT140Q96RY7 SPDYE21P-201ENST00000413323 827 ntBASIC30.18■■■□□ 2.42
IFT140Q96RY7 PAWRP1-201ENST00000451083 565 ntBASIC30.18■■■□□ 2.42
IFT140Q96RY7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC30.18■■■□□ 2.42
IFT140Q96RY7 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
IFT140Q96RY7 CIPC-205ENST00000555437 566 ntTSL 3 BASIC30.18■■■□□ 2.42
IFT140Q96RY7 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC30.18■■■□□ 2.42
IFT140Q96RY7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
IFT140Q96RY7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
IFT140Q96RY7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC30.17■■■□□ 2.42
IFT140Q96RY7 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC30.17■■■□□ 2.42
IFT140Q96RY7 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
IFT140Q96RY7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
IFT140Q96RY7 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC30.17■■■□□ 2.42
IFT140Q96RY7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
IFT140Q96RY7 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC30.17■■■□□ 2.42
IFT140Q96RY7 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
IFT140Q96RY7 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC30.17■■■□□ 2.42
IFT140Q96RY7 AC005498.2-205ENST00000593218 784 ntBASIC30.17■■■□□ 2.42
IFT140Q96RY7 AD001527.2-201ENST00000622994 785 ntBASIC30.17■■■□□ 2.42
IFT140Q96RY7 PWWP2AP1-201ENST00000429776 2273 ntBASIC30.17■■■□□ 2.42
IFT140Q96RY7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
IFT140Q96RY7 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
IFT140Q96RY7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC30.16■■■□□ 2.42
IFT140Q96RY7 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC30.16■■■□□ 2.42
IFT140Q96RY7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC30.16■■■□□ 2.42
IFT140Q96RY7 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC30.16■■■□□ 2.42
IFT140Q96RY7 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC30.16■■■□□ 2.42
IFT140Q96RY7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 VN2R19P-201ENST00000442399 1052 ntBASIC30.16■■■□□ 2.42
IFT140Q96RY7 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC30.16■■■□□ 2.42
IFT140Q96RY7 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC30.16■■■□□ 2.42
IFT140Q96RY7 LINC00602-201ENST00000629776 2065 ntBASIC30.16■■■□□ 2.42
IFT140Q96RY7 LINC00565-201ENST00000562710 2331 ntBASIC30.16■■■□□ 2.42
IFT140Q96RY7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
IFT140Q96RY7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC30.15■■■□□ 2.42
IFT140Q96RY7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC30.15■■■□□ 2.42
IFT140Q96RY7 AL589182.2-201ENST00000619332 1049 ntBASIC30.15■■■□□ 2.42
IFT140Q96RY7 AC004706.3-202ENST00000621574 984 ntBASIC30.15■■■□□ 2.42
IFT140Q96RY7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC30.15■■■□□ 2.42
IFT140Q96RY7 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC30.15■■■□□ 2.42
IFT140Q96RY7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
IFT140Q96RY7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC30.14■■■□□ 2.42
IFT140Q96RY7 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC30.14■■■□□ 2.42
IFT140Q96RY7 AC138761.1-201ENST00000584393 385 ntBASIC30.14■■■□□ 2.42
IFT140Q96RY7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
IFT140Q96RY7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC30.13■■■□□ 2.41
IFT140Q96RY7 COPE-202ENST00000349893 948 ntTSL 2 BASIC30.13■■■□□ 2.41
IFT140Q96RY7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
IFT140Q96RY7 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC30.13■■■□□ 2.41
IFT140Q96RY7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
IFT140Q96RY7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
IFT140Q96RY7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
IFT140Q96RY7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC30.13■■■□□ 2.41
IFT140Q96RY7 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
IFT140Q96RY7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
IFT140Q96RY7 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC30.13■■■□□ 2.41
IFT140Q96RY7 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
IFT140Q96RY7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
IFT140Q96RY7 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
IFT140Q96RY7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
IFT140Q96RY7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
IFT140Q96RY7 CCDC74BP1-201ENST00000508880 1123 ntBASIC30.12■■■□□ 2.41
IFT140Q96RY7 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC30.12■■■□□ 2.41
IFT140Q96RY7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC30.12■■■□□ 2.41
IFT140Q96RY7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
IFT140Q96RY7 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms