Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 MIR149-201ENST00000384879 89 ntBASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 PVRIG2P-201ENST00000435460 978 ntBASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD1Q96NR3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 AC009102.3-201ENST00000623118 1491 ntBASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 AC005082.1-201ENST00000413042 2259 ntBASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 HLA-F-220ENST00000434407 884 ntBASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 VENTXP5-201ENST00000523979 775 ntBASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 AC009113.1-201ENST00000570267 2443 ntBASIC17.26■□□□□ 0.35
PTCHD1Q96NR3 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 FAM86EP-206ENST00000510506 987 ntBASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 AC126763.1-201ENST00000552015 2118 ntBASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 AL136038.3-201ENST00000561909 1096 ntBASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD1Q96NR3 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD1Q96NR3 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms