Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.66■□□□□ 0.58
SHROOM3Q8TF72 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 AC092597.1-201ENST00000487352 616 ntBASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 REXO1L9P-201ENST00000604264 2108 ntBASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 AC093458.2-201ENST00000623150 629 ntBASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 AL133373.2-201ENST00000623187 2828 ntBASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHROOM3Q8TF72 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 AC023511.2-201ENST00000618803 211 ntBASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHROOM3Q8TF72 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 AL136038.4-201ENST00000603606 1261 ntBASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHROOM3Q8TF72 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 KRT8P10-201ENST00000450021 1447 ntBASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms