Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.09■■□□□ 1.45
USHBP1Q8N6Y0 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 CCS-201ENST00000310190 942 ntTSL 5 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 MTCL1P1-201ENST00000446207 792 ntBASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 AL355877.3-201ENST00000622820 899 ntBASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USHBP1Q8N6Y0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USHBP1Q8N6Y0 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.44
USHBP1Q8N6Y0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.44
USHBP1Q8N6Y0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 RNPS1P1-201ENST00000507437 918 ntBASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 MTDHP3-201ENST00000594186 672 ntBASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.07■■□□□ 1.44
USHBP1Q8N6Y0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 AL138831.2-201ENST00000606564 490 ntBASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USHBP1Q8N6Y0 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 PMS2P1-201ENST00000431037 1228 ntBASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 POLD2P1-201ENST00000511220 997 ntBASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
USHBP1Q8N6Y0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 INTS4P1-201ENST00000438455 1935 ntBASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC24.04■■□□□ 1.44
USHBP1Q8N6Y0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC24.04■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms