Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 AC124067.4-201ENST00000519691 2379 ntBASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 YBX1P10-201ENST00000444752 975 ntBASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 AL645608.8-201ENST00000606034 2086 ntBASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PPP4R4Q6NUP7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 TUBB8P6-201ENST00000436895 1288 ntBASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 Z99916.2-201ENST00000604037 246 ntBASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 AC141586.5-201ENST00000624546 2050 ntBASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 AC106820.2-201ENST00000563775 3264 ntBASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PPP4R4Q6NUP7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 AL135905.2-201ENST00000584934 1404 ntBASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 SNORA78-201ENST00000459373 127 ntBASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 AC138028.4-201ENST00000564984 1845 ntBASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PPP4R4Q6NUP7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms