Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 AC135776.1-201ENST00000319817 2481 ntBASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 AL163051.1-201ENST00000569214 1512 ntBASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.91■□□□□ 0.46
PTCHD3Q3KNS1 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 ABALON-201ENST00000629058 1903 ntBASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 ESPNP-201ENST00000270691 2015 ntBASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTCHD3Q3KNS1 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
PTCHD3Q3KNS1 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.89■□□□□ 0.46
PTCHD3Q3KNS1 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PTCHD3Q3KNS1 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PTCHD3Q3KNS1 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 AC104390.1-201ENST00000555663 520 ntBASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTCHD3Q3KNS1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.88■□□□□ 0.45
PTCHD3Q3KNS1 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms