Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 ECEL1P3-201ENST00000427961 737 ntBASIC17.38■□□□□ 0.37
RAE1P78406 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.38■□□□□ 0.37
RAE1P78406 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.38■□□□□ 0.37
RAE1P78406 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.38■□□□□ 0.37
RAE1P78406 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RAE1P78406 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RAE1P78406 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.38■□□□□ 0.37
RAE1P78406 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.37■□□□□ 0.37
RAE1P78406 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RAE1P78406 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.37■□□□□ 0.37
RAE1P78406 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
RAE1P78406 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.37■□□□□ 0.37
RAE1P78406 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.37■□□□□ 0.37
RAE1P78406 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
RAE1P78406 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.37■□□□□ 0.37
RAE1P78406 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.37■□□□□ 0.37
RAE1P78406 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.37■□□□□ 0.37
RAE1P78406 AL512604.3-201ENST00000569583 964 ntBASIC17.37■□□□□ 0.37
RAE1P78406 AC145285.6-201ENST00000604632 637 ntBASIC17.37■□□□□ 0.37
RAE1P78406 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.37■□□□□ 0.37
RAE1P78406 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 KRT18P22-201ENST00000402024 1347 ntBASIC17.37■□□□□ 0.37
RAE1P78406 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RAE1P78406 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.37■□□□□ 0.37
RAE1P78406 AC134043.2-201ENST00000624206 2238 ntBASIC17.37■□□□□ 0.37
RAE1P78406 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.37■□□□□ 0.37
RAE1P78406 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RAE1P78406 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.36■□□□□ 0.37
RAE1P78406 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.36■□□□□ 0.37
RAE1P78406 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.36■□□□□ 0.37
RAE1P78406 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.36■□□□□ 0.37
RAE1P78406 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.36■□□□□ 0.37
RAE1P78406 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.36■□□□□ 0.37
RAE1P78406 MIR3917-201ENST00000580971 93 ntBASIC17.36■□□□□ 0.37
RAE1P78406 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.36■□□□□ 0.37
RAE1P78406 AL138966.2-201ENST00000621997 464 ntBASIC17.36■□□□□ 0.37
RAE1P78406 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RAE1P78406 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RAE1P78406 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RAE1P78406 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.36■□□□□ 0.37
RAE1P78406 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RAE1P78406 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.36■□□□□ 0.37
RAE1P78406 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RAE1P78406 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.36■□□□□ 0.37
RAE1P78406 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.35■□□□□ 0.37
RAE1P78406 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RAE1P78406 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
RAE1P78406 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
RAE1P78406 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms