Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.55■□□□□ 0.88
TPM4P67936 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM4P67936 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.55■□□□□ 0.88
TPM4P67936 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.55■□□□□ 0.88
TPM4P67936 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM4P67936 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TPM4P67936 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM4P67936 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM4P67936 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TPM4P67936 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.54■□□□□ 0.88
TPM4P67936 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TPM4P67936 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TPM4P67936 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 AP000593.1-201ENST00000393668 712 ntBASIC20.54■□□□□ 0.88
TPM4P67936 KRT17P3-201ENST00000420566 1262 ntBASIC20.54■□□□□ 0.88
TPM4P67936 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.54■□□□□ 0.88
TPM4P67936 KRT18P41-201ENST00000518924 1277 ntBASIC20.54■□□□□ 0.88
TPM4P67936 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.54■□□□□ 0.88
TPM4P67936 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.54■□□□□ 0.88
TPM4P67936 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM4P67936 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.54■□□□□ 0.88
TPM4P67936 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.54■□□□□ 0.88
TPM4P67936 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM4P67936 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM4P67936 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 GMCL1P1-201ENST00000463439 1581 ntBASIC20.54■□□□□ 0.88
TPM4P67936 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.54■□□□□ 0.88
TPM4P67936 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM4P67936 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM4P67936 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
TPM4P67936 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TPM4P67936 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.53■□□□□ 0.88
TPM4P67936 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.53■□□□□ 0.88
TPM4P67936 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM4P67936 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM4P67936 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 UNC93B5-201ENST00000530315 699 ntBASIC20.53■□□□□ 0.88
TPM4P67936 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.53■□□□□ 0.88
TPM4P67936 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TPM4P67936 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.53■□□□□ 0.88
TPM4P67936 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM4P67936 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM4P67936 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM4P67936 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.53■□□□□ 0.88
TPM4P67936 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.53■□□□□ 0.88
TPM4P67936 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
TPM4P67936 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
TPM4P67936 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TPM4P67936 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TPM4P67936 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.53■□□□□ 0.88
TPM4P67936 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TPM4P67936 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
TPM4P67936 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
TPM4P67936 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.52■□□□□ 0.88
TPM4P67936 AC139713.2-201ENST00000641328 2723 ntBASIC20.52■□□□□ 0.88
TPM4P67936 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
TPM4P67936 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.52■□□□□ 0.88
TPM4P67936 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM4P67936 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.52■□□□□ 0.88
TPM4P67936 MTDHP1-201ENST00000605323 784 ntBASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms