Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.38■□□□□ 0.21
CLRN1P58418 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CLRN1P58418 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CLRN1P58418 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.38■□□□□ 0.21
CLRN1P58418 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 FAM87A-204ENST00000613235 858 ntBASIC16.38■□□□□ 0.21
CLRN1P58418 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.38■□□□□ 0.21
CLRN1P58418 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.38■□□□□ 0.21
CLRN1P58418 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLRN1P58418 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.38■□□□□ 0.21
CLRN1P58418 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 AL354751.1-201ENST00000412768 1863 ntBASIC16.37■□□□□ 0.21
CLRN1P58418 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.37■□□□□ 0.21
CLRN1P58418 AC009102.3-201ENST00000623118 1491 ntBASIC16.37■□□□□ 0.21
CLRN1P58418 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN1P58418 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.37■□□□□ 0.21
CLRN1P58418 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.37■□□□□ 0.21
CLRN1P58418 MIR149-201ENST00000384879 89 ntBASIC16.37■□□□□ 0.21
CLRN1P58418 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 AC087499.1-201ENST00000418141 1075 ntBASIC16.37■□□□□ 0.21
CLRN1P58418 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN1P58418 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.37■□□□□ 0.21
CLRN1P58418 AC009947.2-201ENST00000444014 672 ntBASIC16.37■□□□□ 0.21
CLRN1P58418 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN1P58418 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.37■□□□□ 0.21
CLRN1P58418 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.37■□□□□ 0.21
CLRN1P58418 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
CLRN1P58418 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 GMCL1P1-201ENST00000463439 1581 ntBASIC16.37■□□□□ 0.21
CLRN1P58418 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.37■□□□□ 0.21
CLRN1P58418 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.37■□□□□ 0.21
CLRN1P58418 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLRN1P58418 AC099343.3-201ENST00000605834 2503 ntBASIC16.37■□□□□ 0.21
CLRN1P58418 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 AC007613.1-201ENST00000572811 2597 ntBASIC16.36■□□□□ 0.21
CLRN1P58418 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms