Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EPHB3P54753 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EPHB3P54753 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.1■□□□□ 0.65
EPHB3P54753 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
EPHB3P54753 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
EPHB3P54753 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.1■□□□□ 0.65
EPHB3P54753 AC079781.3-201ENST00000449110 356 ntBASIC19.1■□□□□ 0.65
EPHB3P54753 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.1■□□□□ 0.65
EPHB3P54753 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
EPHB3P54753 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.1■□□□□ 0.65
EPHB3P54753 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 AC104692.2-201ENST00000603054 253 ntBASIC19.1■□□□□ 0.65
EPHB3P54753 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.1■□□□□ 0.65
EPHB3P54753 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EPHB3P54753 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.1■□□□□ 0.65
EPHB3P54753 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.09■□□□□ 0.65
EPHB3P54753 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.09■□□□□ 0.65
EPHB3P54753 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.09■□□□□ 0.65
EPHB3P54753 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.09■□□□□ 0.65
EPHB3P54753 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.09■□□□□ 0.65
EPHB3P54753 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
EPHB3P54753 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.09■□□□□ 0.65
EPHB3P54753 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.09■□□□□ 0.65
EPHB3P54753 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.09■□□□□ 0.65
EPHB3P54753 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.09■□□□□ 0.65
EPHB3P54753 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EPHB3P54753 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.09■□□□□ 0.65
EPHB3P54753 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.08■□□□□ 0.65
EPHB3P54753 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.65
EPHB3P54753 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
EPHB3P54753 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
EPHB3P54753 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
EPHB3P54753 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
EPHB3P54753 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.08■□□□□ 0.64
EPHB3P54753 AC009078.2-202ENST00000463353 338 ntBASIC19.08■□□□□ 0.64
EPHB3P54753 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.08■□□□□ 0.64
EPHB3P54753 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.08■□□□□ 0.64
EPHB3P54753 AL121912.1-201ENST00000603683 238 ntBASIC19.08■□□□□ 0.64
EPHB3P54753 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.08■□□□□ 0.64
EPHB3P54753 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
EPHB3P54753 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
EPHB3P54753 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.08■□□□□ 0.64
EPHB3P54753 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.08■□□□□ 0.64
EPHB3P54753 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
EPHB3P54753 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.07■□□□□ 0.64
EPHB3P54753 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
EPHB3P54753 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
EPHB3P54753 SAPCD2P3-201ENST00000455031 850 ntBASIC19.07■□□□□ 0.64
EPHB3P54753 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.07■□□□□ 0.64
EPHB3P54753 AC068472.1-201ENST00000474589 881 ntBASIC19.07■□□□□ 0.64
EPHB3P54753 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.07■□□□□ 0.64
EPHB3P54753 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.07■□□□□ 0.64
EPHB3P54753 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.07■□□□□ 0.64
EPHB3P54753 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.07■□□□□ 0.64
EPHB3P54753 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
EPHB3P54753 AC009154.2-201ENST00000621177 724 ntBASIC19.07■□□□□ 0.64
EPHB3P54753 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.07■□□□□ 0.64
EPHB3P54753 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
EPHB3P54753 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
EPHB3P54753 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms