Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 AL499627.1-201ENST00000569373 2188 ntBASIC14.17□□□□□ -0.14
HOXD3P31249 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXD3P31249 BX323043.1-201ENST00000641006 1765 ntBASIC14.17□□□□□ -0.14
HOXD3P31249 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXD3P31249 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.16□□□□□ -0.14
HOXD3P31249 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.16□□□□□ -0.14
HOXD3P31249 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
HOXD3P31249 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.16□□□□□ -0.14
HOXD3P31249 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.16□□□□□ -0.14
HOXD3P31249 AC016734.2-201ENST00000624325 1377 ntBASIC14.16□□□□□ -0.14
HOXD3P31249 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC14.16□□□□□ -0.14
HOXD3P31249 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 MYLKP1-201ENST00000509077 1580 ntBASIC14.16□□□□□ -0.14
HOXD3P31249 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HOXD3P31249 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.16□□□□□ -0.14
HOXD3P31249 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HOXD3P31249 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD3P31249 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 AL163051.1-201ENST00000569214 1512 ntBASIC14.15□□□□□ -0.14
HOXD3P31249 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXD3P31249 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXD3P31249 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 AC098818.2-201ENST00000564925 2320 ntBASIC14.15□□□□□ -0.14
HOXD3P31249 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXD3P31249 AC087289.5-201ENST00000586076 3175 ntBASIC14.15□□□□□ -0.14
HOXD3P31249 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 AL031598.1-201ENST00000561511 1773 ntBASIC14.15□□□□□ -0.14
HOXD3P31249 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXD3P31249 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HOXD3P31249 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXD3P31249 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD3P31249 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD3P31249 AP002414.4-201ENST00000589764 1148 ntBASIC14.15□□□□□ -0.14
HOXD3P31249 AL136038.4-201ENST00000603606 1261 ntBASIC14.15□□□□□ -0.14
HOXD3P31249 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXD3P31249 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
HOXD3P31249 CROCCP3-202ENST00000420820 1947 ntBASIC14.15□□□□□ -0.14
HOXD3P31249 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD3P31249 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD3P31249 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD3P31249 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD3P31249 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
HOXD3P31249 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
HOXD3P31249 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXD3P31249 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD3P31249 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXD3P31249 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD3P31249 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD3P31249 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms