Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BDNFP23560 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.27■□□□□ 0.68
BDNFP23560 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.27■□□□□ 0.68
BDNFP23560 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
BDNFP23560 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.27■□□□□ 0.68
BDNFP23560 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.27■□□□□ 0.68
BDNFP23560 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
BDNFP23560 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.27■□□□□ 0.68
BDNFP23560 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BDNFP23560 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BDNFP23560 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
BDNFP23560 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BDNFP23560 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.27■□□□□ 0.67
BDNFP23560 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BDNFP23560 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
BDNFP23560 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BDNFP23560 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.26■□□□□ 0.67
BDNFP23560 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.26■□□□□ 0.67
BDNFP23560 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
BDNFP23560 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
BDNFP23560 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
BDNFP23560 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
BDNFP23560 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.26■□□□□ 0.67
BDNFP23560 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.26■□□□□ 0.67
BDNFP23560 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.26■□□□□ 0.67
BDNFP23560 AC090616.6-201ENST00000582640 721 ntBASIC19.26■□□□□ 0.67
BDNFP23560 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 CLEC4GP1-201ENST00000596555 870 ntBASIC19.26■□□□□ 0.67
BDNFP23560 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.26■□□□□ 0.67
BDNFP23560 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BDNFP23560 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.26■□□□□ 0.67
BDNFP23560 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
BDNFP23560 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
BDNFP23560 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
BDNFP23560 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.25■□□□□ 0.67
BDNFP23560 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.25■□□□□ 0.67
BDNFP23560 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.25■□□□□ 0.67
BDNFP23560 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.25■□□□□ 0.67
BDNFP23560 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.25■□□□□ 0.67
BDNFP23560 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.25■□□□□ 0.67
BDNFP23560 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 TPSP2-201ENST00000561760 610 ntBASIC19.25■□□□□ 0.67
BDNFP23560 AC008687.5-201ENST00000593746 558 ntBASIC19.25■□□□□ 0.67
BDNFP23560 AC012313.10-201ENST00000623509 926 ntBASIC19.25■□□□□ 0.67
BDNFP23560 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
BDNFP23560 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.25■□□□□ 0.67
BDNFP23560 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
BDNFP23560 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.25■□□□□ 0.67
BDNFP23560 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
BDNFP23560 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
BDNFP23560 WIZP1-201ENST00000531444 2299 ntBASIC19.25■□□□□ 0.67
BDNFP23560 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
BDNFP23560 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.24■□□□□ 0.67
BDNFP23560 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.24■□□□□ 0.67
BDNFP23560 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
BDNFP23560 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms