Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH3P20585 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSH3P20585 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
MSH3P20585 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.25■□□□□ 0.51
MSH3P20585 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.25■□□□□ 0.51
MSH3P20585 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.24■□□□□ 0.51
MSH3P20585 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
MSH3P20585 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.24■□□□□ 0.51
MSH3P20585 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 MIR149-201ENST00000384879 89 ntBASIC18.24■□□□□ 0.51
MSH3P20585 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.24■□□□□ 0.51
MSH3P20585 RASA4DP-201ENST00000460726 1199 ntBASIC18.24■□□□□ 0.51
MSH3P20585 AC063952.2-201ENST00000498792 1227 ntBASIC18.24■□□□□ 0.51
MSH3P20585 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.24■□□□□ 0.51
MSH3P20585 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.24■□□□□ 0.51
MSH3P20585 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 AL157888.1-201ENST00000631930 593 ntBASIC18.24■□□□□ 0.51
MSH3P20585 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.24■□□□□ 0.51
MSH3P20585 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.24■□□□□ 0.51
MSH3P20585 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH3P20585 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
MSH3P20585 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.23■□□□□ 0.51
MSH3P20585 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
MSH3P20585 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.23■□□□□ 0.51
MSH3P20585 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 BICD1-207ENST00000551848 1962 ntBASIC18.23■□□□□ 0.51
MSH3P20585 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 AC009102.3-201ENST00000623118 1491 ntBASIC18.23■□□□□ 0.51
MSH3P20585 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 STARP1-201ENST00000397973 869 ntBASIC18.23■□□□□ 0.51
MSH3P20585 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
MSH3P20585 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.23■□□□□ 0.51
MSH3P20585 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 AL359075.1-203ENST00000462729 1002 ntBASIC18.23■□□□□ 0.51
MSH3P20585 AC022616.7-201ENST00000525383 220 ntBASIC18.23■□□□□ 0.51
MSH3P20585 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.23■□□□□ 0.51
MSH3P20585 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.23■□□□□ 0.51
MSH3P20585 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.23■□□□□ 0.51
MSH3P20585 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
MSH3P20585 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.23■□□□□ 0.51
MSH3P20585 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.23■□□□□ 0.51
MSH3P20585 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH3P20585 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MSH3P20585 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.22■□□□□ 0.51
MSH3P20585 AC073592.3-201ENST00000625118 1834 ntBASIC18.22■□□□□ 0.51
MSH3P20585 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.22■□□□□ 0.51
MSH3P20585 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.22■□□□□ 0.51
MSH3P20585 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.22■□□□□ 0.51
MSH3P20585 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
MSH3P20585 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
MSH3P20585 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
MSH3P20585 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MSH3P20585 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH3P20585 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.21■□□□□ 0.51
MSH3P20585 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH3P20585 AL390961.4-201ENST00000623958 2535 ntBASIC18.21■□□□□ 0.51
MSH3P20585 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms