Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.21■□□□□ 0.83
TPM1P09493 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TPM1P09493 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TPM1P09493 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TPM1P09493 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TPM1P09493 AC141586.5-201ENST00000624546 2050 ntBASIC20.2■□□□□ 0.82
TPM1P09493 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM1P09493 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM1P09493 KRASP1-201ENST00000407852 552 ntBASIC20.2■□□□□ 0.82
TPM1P09493 AP003097.1-201ENST00000530657 1135 ntBASIC20.2■□□□□ 0.82
TPM1P09493 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
TPM1P09493 FLJ13224-201ENST00000313737 1514 ntBASIC20.2■□□□□ 0.82
TPM1P09493 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM1P09493 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM1P09493 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TPM1P09493 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.19■□□□□ 0.82
TPM1P09493 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 AC099398.1-201ENST00000567919 2776 ntBASIC20.19■□□□□ 0.82
TPM1P09493 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TPM1P09493 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.19■□□□□ 0.82
TPM1P09493 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.19■□□□□ 0.82
TPM1P09493 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.19■□□□□ 0.82
TPM1P09493 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.19■□□□□ 0.82
TPM1P09493 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 AC008403.3-201ENST00000598924 454 ntBASIC20.19■□□□□ 0.82
TPM1P09493 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.19■□□□□ 0.82
TPM1P09493 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TPM1P09493 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
TPM1P09493 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM1P09493 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.18■□□□□ 0.82
TPM1P09493 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TPM1P09493 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TPM1P09493 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.18■□□□□ 0.82
TPM1P09493 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TPM1P09493 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
TPM1P09493 AC142086.2-201ENST00000569753 217 ntBASIC20.18■□□□□ 0.82
TPM1P09493 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.18■□□□□ 0.82
TPM1P09493 AL023875.1-201ENST00000640777 796 ntBASIC20.18■□□□□ 0.82
TPM1P09493 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TPM1P09493 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TPM1P09493 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TPM1P09493 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM1P09493 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM1P09493 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.17■□□□□ 0.82
TPM1P09493 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TPM1P09493 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.17■□□□□ 0.82
TPM1P09493 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TPM1P09493 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms