Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.43■□□□□ 0.54
VIMP08670 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 AL357033.4-201ENST00000617703 1807 ntBASIC18.42■□□□□ 0.54
VIMP08670 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.42■□□□□ 0.54
VIMP08670 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.42■□□□□ 0.54
VIMP08670 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VIMP08670 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 AL512625.2-201ENST00000417533 625 ntBASIC18.42■□□□□ 0.54
VIMP08670 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.42■□□□□ 0.54
VIMP08670 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.42■□□□□ 0.54
VIMP08670 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.42■□□□□ 0.54
VIMP08670 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
VIMP08670 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VIMP08670 MIR6821-201ENST00000617625 74 ntBASIC18.42■□□□□ 0.54
VIMP08670 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.42■□□□□ 0.54
VIMP08670 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.42■□□□□ 0.54
VIMP08670 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 AP001094.4-201ENST00000579008 2176 ntBASIC18.42■□□□□ 0.54
VIMP08670 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.42■□□□□ 0.54
VIMP08670 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VIMP08670 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.41■□□□□ 0.54
VIMP08670 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.41■□□□□ 0.54
VIMP08670 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
VIMP08670 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.41■□□□□ 0.54
VIMP08670 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.41■□□□□ 0.54
VIMP08670 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.41■□□□□ 0.54
VIMP08670 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.41■□□□□ 0.54
VIMP08670 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VIMP08670 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.41■□□□□ 0.54
VIMP08670 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.41■□□□□ 0.54
VIMP08670 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.41■□□□□ 0.54
VIMP08670 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VIMP08670 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
VIMP08670 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
VIMP08670 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VIMP08670 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.41■□□□□ 0.54
VIMP08670 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VIMP08670 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VIMP08670 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VIMP08670 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VIMP08670 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.4■□□□□ 0.54
VIMP08670 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.4■□□□□ 0.54
VIMP08670 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms