Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
MBD3O95983 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.02■□□□□ 0.96
MBD3O95983 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MBD3O95983 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC21.02■□□□□ 0.96
MBD3O95983 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
MBD3O95983 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MBD3O95983 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MBD3O95983 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MBD3O95983 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.02■□□□□ 0.96
MBD3O95983 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.02■□□□□ 0.96
MBD3O95983 AL445675.2-201ENST00000620291 557 ntBASIC21.02■□□□□ 0.96
MBD3O95983 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MBD3O95983 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
MBD3O95983 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MBD3O95983 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MBD3O95983 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MBD3O95983 AP001094.4-201ENST00000579008 2176 ntBASIC21.02■□□□□ 0.95
MBD3O95983 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.01■□□□□ 0.95
MBD3O95983 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
MBD3O95983 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.01■□□□□ 0.95
MBD3O95983 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
MBD3O95983 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
MBD3O95983 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MBD3O95983 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC21■□□□□ 0.95
MBD3O95983 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21■□□□□ 0.95
MBD3O95983 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
MBD3O95983 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
MBD3O95983 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21■□□□□ 0.95
MBD3O95983 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 RARRES2P6-201ENST00000567333 442 ntBASIC21■□□□□ 0.95
MBD3O95983 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21■□□□□ 0.95
MBD3O95983 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 AC131212.4-201ENST00000623606 975 ntBASIC21■□□□□ 0.95
MBD3O95983 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21■□□□□ 0.95
MBD3O95983 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 LINC00602-201ENST00000629776 2065 ntBASIC21■□□□□ 0.95
MBD3O95983 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MBD3O95983 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.99■□□□□ 0.95
MBD3O95983 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 AC022211.2-201ENST00000585075 2527 ntBASIC20.99■□□□□ 0.95
MBD3O95983 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
MBD3O95983 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
MBD3O95983 TSPY6P-201ENST00000448518 926 ntBASIC20.99■□□□□ 0.95
MBD3O95983 AC006970.2-201ENST00000450065 779 ntBASIC20.99■□□□□ 0.95
MBD3O95983 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
MBD3O95983 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
MBD3O95983 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
MBD3O95983 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MBD3O95983 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MBD3O95983 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MBD3O95983 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MBD3O95983 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MBD3O95983 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MBD3O95983 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms