Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTDNEP1O95476 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CTDNEP1O95476 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 TERF1P1-201ENST00000311003 1181 ntBASIC21.22■□□□□ 0.99
CTDNEP1O95476 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.22■□□□□ 0.99
CTDNEP1O95476 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTDNEP1O95476 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 AC113347.1-201ENST00000413321 391 ntBASIC21.21■□□□□ 0.99
CTDNEP1O95476 AC211429.1-201ENST00000415277 523 ntBASIC21.21■□□□□ 0.99
CTDNEP1O95476 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 AC009065.1-201ENST00000564055 1225 ntBASIC21.21■□□□□ 0.99
CTDNEP1O95476 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 AC079602.3-201ENST00000623931 403 ntBASIC21.21■□□□□ 0.99
CTDNEP1O95476 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 LETM1P2-201ENST00000597330 2178 ntBASIC21.21■□□□□ 0.99
CTDNEP1O95476 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTDNEP1O95476 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.21■□□□□ 0.99
CTDNEP1O95476 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 AP000523.1-201ENST00000398242 1049 ntBASIC21.2■□□□□ 0.98
CTDNEP1O95476 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDNEP1O95476 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.2■□□□□ 0.98
CTDNEP1O95476 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDNEP1O95476 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDNEP1O95476 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.19■□□□□ 0.98
CTDNEP1O95476 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDNEP1O95476 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 PVRIG2P-201ENST00000435460 978 ntBASIC21.19■□□□□ 0.98
CTDNEP1O95476 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 AC092865.7-201ENST00000641832 219 ntBASIC21.19■□□□□ 0.98
CTDNEP1O95476 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms