Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 FXN-203ENST00000396366 922 ntTSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20■□□□□ 0.79
CLDN3O15551 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20■□□□□ 0.79
CLDN3O15551 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20■□□□□ 0.79
CLDN3O15551 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20■□□□□ 0.79
CLDN3O15551 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20■□□□□ 0.79
CLDN3O15551 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20■□□□□ 0.79
CLDN3O15551 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CLDN3O15551 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20■□□□□ 0.79
CLDN3O15551 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CLDN3O15551 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CLDN3O15551 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CLDN3O15551 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.99■□□□□ 0.79
CLDN3O15551 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.99■□□□□ 0.79
CLDN3O15551 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CLDN3O15551 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.99■□□□□ 0.79
CLDN3O15551 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.99■□□□□ 0.79
CLDN3O15551 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CLDN3O15551 AC009113.1-201ENST00000570267 2443 ntBASIC19.99■□□□□ 0.79
CLDN3O15551 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.99■□□□□ 0.79
CLDN3O15551 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CLDN3O15551 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.99■□□□□ 0.79
CLDN3O15551 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN3O15551 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.99■□□□□ 0.79
CLDN3O15551 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.99■□□□□ 0.79
CLDN3O15551 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.99■□□□□ 0.79
CLDN3O15551 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.98■□□□□ 0.79
CLDN3O15551 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CLDN3O15551 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CLDN3O15551 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.98■□□□□ 0.79
CLDN3O15551 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.98■□□□□ 0.79
CLDN3O15551 KRT18P48-201ENST00000434763 852 ntBASIC19.98■□□□□ 0.79
CLDN3O15551 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.98■□□□□ 0.79
CLDN3O15551 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.98■□□□□ 0.79
CLDN3O15551 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.98■□□□□ 0.79
CLDN3O15551 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.98■□□□□ 0.79
CLDN3O15551 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLDN3O15551 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.97■□□□□ 0.79
CLDN3O15551 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.97■□□□□ 0.79
CLDN3O15551 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CLDN3O15551 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.97■□□□□ 0.79
CLDN3O15551 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.97■□□□□ 0.79
CLDN3O15551 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.97■□□□□ 0.79
CLDN3O15551 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CLDN3O15551 AP003733.1-201ENST00000491725 852 ntBASIC19.97■□□□□ 0.79
CLDN3O15551 AC011498.5-201ENST00000592027 486 ntBASIC19.97■□□□□ 0.79
CLDN3O15551 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.97■□□□□ 0.79
CLDN3O15551 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
CLDN3O15551 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
CLDN3O15551 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLDN3O15551 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.96■□□□□ 0.79
CLDN3O15551 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms