Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC23.04■■□□□ 1.28
NPHP1O15259 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP1O15259 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP1O15259 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 MED22-202ENST00000371999 987 ntTSL 3 BASIC23.04■■□□□ 1.28
NPHP1O15259 PPIE-208ENST00000470213 927 ntTSL 3 BASIC23.04■■□□□ 1.28
NPHP1O15259 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC23.04■■□□□ 1.28
NPHP1O15259 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP1O15259 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.04■■□□□ 1.28
NPHP1O15259 AL671883.3-201ENST00000603274 991 ntBASIC23.04■■□□□ 1.28
NPHP1O15259 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP1O15259 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
NPHP1O15259 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC23.03■■□□□ 1.28
NPHP1O15259 AC141586.3-201ENST00000562166 1838 ntBASIC23.03■■□□□ 1.28
NPHP1O15259 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
NPHP1O15259 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC23.03■■□□□ 1.28
NPHP1O15259 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 AL031284.1-201ENST00000419297 478 ntBASIC23.03■■□□□ 1.28
NPHP1O15259 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC23.03■■□□□ 1.28
NPHP1O15259 KRT18P67-201ENST00000432816 1264 ntBASIC23.03■■□□□ 1.28
NPHP1O15259 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC23.03■■□□□ 1.28
NPHP1O15259 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
NPHP1O15259 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC23.03■■□□□ 1.28
NPHP1O15259 MIR5100-201ENST00000579544 119 ntBASIC23.03■■□□□ 1.28
NPHP1O15259 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC23.03■■□□□ 1.28
NPHP1O15259 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC23.03■■□□□ 1.28
NPHP1O15259 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.03■■□□□ 1.28
NPHP1O15259 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.03■■□□□ 1.28
NPHP1O15259 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
NPHP1O15259 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 AL357033.4-201ENST00000617703 1807 ntBASIC23.03■■□□□ 1.28
NPHP1O15259 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP1O15259 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC23.02■■□□□ 1.28
NPHP1O15259 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.02■■□□□ 1.28
NPHP1O15259 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
NPHP1O15259 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC23.02■■□□□ 1.28
NPHP1O15259 MIR574-201ENST00000385209 96 ntBASIC23.02■■□□□ 1.28
NPHP1O15259 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC23.02■■□□□ 1.28
NPHP1O15259 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC23.02■■□□□ 1.28
NPHP1O15259 AC008608.2-201ENST00000606089 416 ntBASIC23.02■■□□□ 1.28
NPHP1O15259 AC139530.3-201ENST00000620344 690 ntBASIC23.02■■□□□ 1.28
NPHP1O15259 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
NPHP1O15259 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
NPHP1O15259 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC23.02■■□□□ 1.28
NPHP1O15259 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP1O15259 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
NPHP1O15259 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 KRT8P50-201ENST00000562022 1438 ntBASIC23.01■■□□□ 1.27
NPHP1O15259 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC23.01■■□□□ 1.27
NPHP1O15259 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 AC092865.5-201ENST00000545435 363 ntBASIC23.01■■□□□ 1.27
NPHP1O15259 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC23.01■■□□□ 1.27
NPHP1O15259 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP1O15259 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 BNIP3P18-201ENST00000593976 575 ntBASIC23.01■■□□□ 1.27
NPHP1O15259 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.01■■□□□ 1.27
NPHP1O15259 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP1O15259 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC23.01■■□□□ 1.27
NPHP1O15259 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP1O15259 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC23■■□□□ 1.27
NPHP1O15259 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 EMD-201ENST00000369835 966 ntTSL 3 BASIC23■■□□□ 1.27
NPHP1O15259 HES2-202ENST00000377836 507 ntTSL 2 BASIC23■■□□□ 1.27
NPHP1O15259 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 DDT-203ENST00000403754 569 ntTSL 3 BASIC23■■□□□ 1.27
NPHP1O15259 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP1O15259 DDT-206ENST00000430101 573 ntTSL 2 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms