Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.14■□□□□ 0.33
CACNA1AO00555 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CACNA1AO00555 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CACNA1AO00555 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.14■□□□□ 0.33
CACNA1AO00555 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CACNA1AO00555 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CACNA1AO00555 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.14■□□□□ 0.33
CACNA1AO00555 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.14■□□□□ 0.33
CACNA1AO00555 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CACNA1AO00555 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CACNA1AO00555 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CACNA1AO00555 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.14■□□□□ 0.33
CACNA1AO00555 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.13■□□□□ 0.33
CACNA1AO00555 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC17.13■□□□□ 0.33
CACNA1AO00555 ACA64.2-201ENST00000459014 129 ntBASIC17.13■□□□□ 0.33
CACNA1AO00555 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.13■□□□□ 0.33
CACNA1AO00555 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.13■□□□□ 0.33
CACNA1AO00555 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.13■□□□□ 0.33
CACNA1AO00555 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.13■□□□□ 0.33
CACNA1AO00555 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.13■□□□□ 0.33
CACNA1AO00555 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.13■□□□□ 0.33
CACNA1AO00555 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CACNA1AO00555 AC107890.1-201ENST00000422478 521 ntBASIC17.13■□□□□ 0.33
CACNA1AO00555 AC009154.2-201ENST00000621177 724 ntBASIC17.13■□□□□ 0.33
CACNA1AO00555 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CACNA1AO00555 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.13■□□□□ 0.33
CACNA1AO00555 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CACNA1AO00555 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
CACNA1AO00555 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.12■□□□□ 0.33
CACNA1AO00555 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.12■□□□□ 0.33
CACNA1AO00555 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.12■□□□□ 0.33
CACNA1AO00555 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 AC079776.1-201ENST00000401540 1152 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 SERBP1P5-201ENST00000510079 1181 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 AP001059.3-201ENST00000619053 235 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.12■□□□□ 0.33
CACNA1AO00555 AL691432.2-201ENST00000607222 2038 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.12■□□□□ 0.33
CACNA1AO00555 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 PIN1P1-201ENST00000412108 996 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.12■□□□□ 0.33
CACNA1AO00555 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.12■□□□□ 0.33
CACNA1AO00555 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.12■□□□□ 0.33
CACNA1AO00555 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.12■□□□□ 0.33
CACNA1AO00555 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 AL357033.4-201ENST00000617703 1807 ntBASIC17.12■□□□□ 0.33
CACNA1AO00555 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CACNA1AO00555 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.12■□□□□ 0.33
CACNA1AO00555 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.11■□□□□ 0.33
CACNA1AO00555 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CACNA1AO00555 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.11■□□□□ 0.33
CACNA1AO00555 BCYRN1-201ENST00000418539 200 ntBASIC17.11■□□□□ 0.33
CACNA1AO00555 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CACNA1AO00555 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.11■□□□□ 0.33
CACNA1AO00555 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.11■□□□□ 0.33
CACNA1AO00555 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.11■□□□□ 0.33
CACNA1AO00555 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.11■□□□□ 0.33
CACNA1AO00555 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CACNA1AO00555 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CACNA1AO00555 AC068137.2-201ENST00000605408 478 ntBASIC17.11■□□□□ 0.33
CACNA1AO00555 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CACNA1AO00555 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CACNA1AO00555 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.11■□□□□ 0.33
CACNA1AO00555 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.11■□□□□ 0.33
CACNA1AO00555 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.11■□□□□ 0.33
CACNA1AO00555 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CACNA1AO00555 DDX43P3-201ENST00000441064 443 ntBASIC17.11■□□□□ 0.33
CACNA1AO00555 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.11■□□□□ 0.33
CACNA1AO00555 AC140878.1-201ENST00000565277 250 ntBASIC17.11■□□□□ 0.33
CACNA1AO00555 IGHV3-72-202ENST00000621503 303 ntBASIC17.11■□□□□ 0.33
CACNA1AO00555 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms