Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 AL592071.1-201ENST00000611956 408 ntBASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV40A0A0B4J280 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 AC104819.1-201ENST00000504587 486 ntBASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 GUSBP12-201ENST00000513727 720 ntBASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 AC012615.1-201ENST00000565797 1299 ntBASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV40A0A0B4J280 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 KRT89P-201ENST00000620027 1478 ntBASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 AL353692.3-201ENST00000407031 1396 ntBASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 VENTXP7-201ENST00000475503 772 ntBASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 LINC00167-201ENST00000530583 1419 ntBASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 MYLKP1-201ENST00000509077 1580 ntBASIC14.9□□□□□ -0.02
TRAV40A0A0B4J280 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
TRAV40A0A0B4J280 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms