Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 ATP5G2P1-201ENST00000433580 426 ntBASIC21.08■□□□□ 0.97
DDX41Q9UJV9 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 KRT126P-201ENST00000549467 1181 ntBASIC21.08■□□□□ 0.97
DDX41Q9UJV9 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.08■□□□□ 0.97
DDX41Q9UJV9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
DDX41Q9UJV9 FP475955.4-201ENST00000623131 1990 ntBASIC21.08■□□□□ 0.96
DDX41Q9UJV9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
DDX41Q9UJV9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.08■□□□□ 0.96
DDX41Q9UJV9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
DDX41Q9UJV9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 MIR564-202ENST00000385049 94 ntBASIC21.07■□□□□ 0.96
DDX41Q9UJV9 HLA-F-220ENST00000434407 884 ntBASIC21.07■□□□□ 0.96
DDX41Q9UJV9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 AC068880.1-201ENST00000507289 2297 ntBASIC21.07■□□□□ 0.96
DDX41Q9UJV9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX41Q9UJV9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 KRT8P7-201ENST00000533003 1432 ntBASIC21.06■□□□□ 0.96
DDX41Q9UJV9 HOXB1-202ENST00000577092 1414 ntBASIC21.06■□□□□ 0.96
DDX41Q9UJV9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 KRT18P23-201ENST00000435622 1283 ntBASIC21.06■□□□□ 0.96
DDX41Q9UJV9 DUSP5P1-201ENST00000441325 1139 ntBASIC21.06■□□□□ 0.96
DDX41Q9UJV9 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 NPAP1P7-201ENST00000613027 823 ntBASIC21.06■□□□□ 0.96
DDX41Q9UJV9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX41Q9UJV9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 AC139713.2-201ENST00000641328 2723 ntBASIC21.05■□□□□ 0.96
DDX41Q9UJV9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms