Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 AF186192.3-201ENST00000583427 947 ntBASIC18.12■□□□□ 0.49
MKS1Q9NXB0 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 HOXB1-202ENST00000577092 1414 ntBASIC18.12■□□□□ 0.49
MKS1Q9NXB0 FSCN1P1-201ENST00000568912 1481 ntBASIC18.12■□□□□ 0.49
MKS1Q9NXB0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 CA15P1-201ENST00000481698 905 ntBASIC18.11■□□□□ 0.49
MKS1Q9NXB0 RARRES2P10-201ENST00000564312 460 ntBASIC18.11■□□□□ 0.49
MKS1Q9NXB0 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 AL023806.1-201ENST00000603994 1649 ntBASIC18.11■□□□□ 0.49
MKS1Q9NXB0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MKS1Q9NXB0 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.1■□□□□ 0.49
MKS1Q9NXB0 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 DGCR10-201ENST00000609839 495 ntBASIC18.1■□□□□ 0.49
MKS1Q9NXB0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 AC106820.2-201ENST00000563775 3264 ntBASIC18.1■□□□□ 0.49
MKS1Q9NXB0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MKS1Q9NXB0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MKS1Q9NXB0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms