Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 FAM8A6P-201ENST00000407496 1135 ntBASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 SPDYE15P-201ENST00000424157 909 ntBASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 MIR3917-201ENST00000580971 93 ntBASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 AC090164.3-201ENST00000610780 2143 ntBASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 TSPY5P-201ENST00000426936 936 ntBASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 KRT18P38-201ENST00000449496 1282 ntBASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CUEDC1Q9NWM3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 AL359075.1-203ENST00000462729 1002 ntBASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.73■□□□□ 0.43
CUEDC1Q9NWM3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 SDHAP2-201ENST00000455183 2001 ntBASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms