Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
TM9SF3Q9HD45 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 AC009078.2-202ENST00000463353 338 ntBASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 GPR32P1-201ENST00000601788 811 ntBASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.33■□□□□ 0.52
TM9SF3Q9HD45 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 AC074051.2-201ENST00000565115 352 ntBASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.32■□□□□ 0.52
TM9SF3Q9HD45 FP475955.4-201ENST00000623131 1990 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 AC233702.3-201ENST00000578656 1387 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 NEFHP1-201ENST00000412845 2629 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 AIRN-201ENST00000601203 4374 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 AC104692.2-201ENST00000603054 253 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 AC138894.3-201ENST00000603787 634 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 LINC00167-201ENST00000530583 1419 ntBASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TM9SF3Q9HD45 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TM9SF3Q9HD45 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms