Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 RCN1P2-201ENST00000398357 915 ntBASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 FAM197Y8-203ENST00000450145 560 ntBASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 AC132008.2-207ENST00000454517 770 ntBASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 AC120114.3-201ENST00000611923 658 ntBASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RPAP3Q9H6T3 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 RNA5SP419-201ENST00000515908 135 ntBASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 TP73-AS1-210ENST00000637775 1455 ntBASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
RPAP3Q9H6T3 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 LINC00602-201ENST00000629776 2065 ntBASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 LINC01126-201ENST00000623515 1646 ntBASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 AL590627.1-203ENST00000421194 1026 ntBASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 AC064862.7-201ENST00000604520 867 ntBASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RPAP3Q9H6T3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 AP001005.1-201ENST00000571755 1248 ntBASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 AC008608.2-201ENST00000606089 416 ntBASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 BX640515.1-201ENST00000617215 977 ntBASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 AL773604.1-201ENST00000617417 272 ntBASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 AC009154.2-201ENST00000621177 724 ntBASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RPAP3Q9H6T3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.03■□□□□ 0.96
RPAP3Q9H6T3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RPAP3Q9H6T3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms