Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCSER1Q9C0I3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 ATP5G1P1-201ENST00000448724 379 ntBASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 COX11P1-201ENST00000489116 835 ntBASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 AL441883.1-201ENST00000566170 1045 ntBASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCSER1Q9C0I3 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCSER1Q9C0I3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
CCSER1Q9C0I3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
CCSER1Q9C0I3 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCSER1Q9C0I3 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.52■□□□□ 0.87
CCSER1Q9C0I3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCSER1Q9C0I3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCSER1Q9C0I3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 BX664615.1-201ENST00000443558 458 ntBASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 FAM210CP-201ENST00000445714 574 ntBASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.51■□□□□ 0.87
CCSER1Q9C0I3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 AC005521.1-201ENST00000393351 872 ntBASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 SLC25A6P5-201ENST00000435663 894 ntBASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 AC140113.3-201ENST00000605663 199 ntBASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 AC008764.6-201ENST00000595909 2069 ntBASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.5■□□□□ 0.87
CCSER1Q9C0I3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 AC034232.1-201ENST00000506026 1064 ntBASIC20.49■□□□□ 0.87
CCSER1Q9C0I3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms