Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
COL12A1Q99715 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.97■□□□□ 0.15
COL12A1Q99715 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.97■□□□□ 0.15
COL12A1Q99715 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.97■□□□□ 0.15
COL12A1Q99715 AC064836.3-201ENST00000607928 673 ntBASIC15.97■□□□□ 0.15
COL12A1Q99715 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.96■□□□□ 0.15
COL12A1Q99715 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.96■□□□□ 0.15
COL12A1Q99715 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.96■□□□□ 0.15
COL12A1Q99715 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL12A1Q99715 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
COL12A1Q99715 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.96■□□□□ 0.15
COL12A1Q99715 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.96■□□□□ 0.15
COL12A1Q99715 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
COL12A1Q99715 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC15.96■□□□□ 0.15
COL12A1Q99715 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL12A1Q99715 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL12A1Q99715 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL12A1Q99715 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL12A1Q99715 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.96■□□□□ 0.14
COL12A1Q99715 ABCD1P5-201ENST00000445663 754 ntBASIC15.96■□□□□ 0.14
COL12A1Q99715 AC069262.1-201ENST00000539058 672 ntBASIC15.96■□□□□ 0.14
COL12A1Q99715 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.96■□□□□ 0.14
COL12A1Q99715 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL12A1Q99715 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC15.96■□□□□ 0.14
COL12A1Q99715 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC15.95■□□□□ 0.14
COL12A1Q99715 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.95■□□□□ 0.14
COL12A1Q99715 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 RCC2P3-201ENST00000418112 1537 ntBASIC15.95■□□□□ 0.14
COL12A1Q99715 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.95■□□□□ 0.14
COL12A1Q99715 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 AC093214.1-201ENST00000511688 1107 ntBASIC15.95■□□□□ 0.14
COL12A1Q99715 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.95■□□□□ 0.14
COL12A1Q99715 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.95■□□□□ 0.14
COL12A1Q99715 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.95■□□□□ 0.14
COL12A1Q99715 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL12A1Q99715 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.95■□□□□ 0.14
COL12A1Q99715 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL12A1Q99715 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
COL12A1Q99715 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
COL12A1Q99715 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.95■□□□□ 0.14
COL12A1Q99715 CEND1P1-201ENST00000451006 455 ntBASIC15.95■□□□□ 0.14
COL12A1Q99715 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.95■□□□□ 0.14
COL12A1Q99715 RNA5SP421-201ENST00000516864 134 ntBASIC15.95■□□□□ 0.14
COL12A1Q99715 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.95■□□□□ 0.14
COL12A1Q99715 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL12A1Q99715 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL12A1Q99715 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC15.94■□□□□ 0.14
COL12A1Q99715 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.94■□□□□ 0.14
COL12A1Q99715 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.94■□□□□ 0.14
COL12A1Q99715 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.94■□□□□ 0.14
COL12A1Q99715 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.94■□□□□ 0.14
COL12A1Q99715 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 PALM-208ENST00000592155 2272 ntTSL 4 BASIC15.94■□□□□ 0.14
COL12A1Q99715 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
COL12A1Q99715 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.94■□□□□ 0.14
COL12A1Q99715 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.94■□□□□ 0.14
COL12A1Q99715 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.94■□□□□ 0.14
COL12A1Q99715 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL12A1Q99715 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.94■□□□□ 0.14
COL12A1Q99715 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL12A1Q99715 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms