Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 ZNF444P1-201ENST00000559497 298 ntBASIC18.19■□□□□ 0.5
VPS35Q96QK1 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 AL121956.5-201ENST00000625261 221 ntBASIC18.19■□□□□ 0.5
VPS35Q96QK1 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 AC087388.1-201ENST00000571370 1112 ntBASIC18.18■□□□□ 0.5
VPS35Q96QK1 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS35Q96QK1 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VPS35Q96QK1 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 SPDYE13P-201ENST00000445314 798 ntBASIC18.17■□□□□ 0.5
VPS35Q96QK1 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS35Q96QK1 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS35Q96QK1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms