Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1AQ8TE12 AC104692.2-201ENST00000603054 253 ntBASIC17.85■□□□□ 0.45
LMX1AQ8TE12 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 KRT16P4-201ENST00000453883 522 ntBASIC17.84■□□□□ 0.45
LMX1AQ8TE12 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1AQ8TE12 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.83■□□□□ 0.45
LMX1AQ8TE12 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 TSPY12P-201ENST00000421279 868 ntBASIC17.83■□□□□ 0.44
LMX1AQ8TE12 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms