Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
USP39Q53GS9 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 AC106795.1-205ENST00000512851 1056 ntBASIC18.63■□□□□ 0.57
USP39Q53GS9 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.63■□□□□ 0.57
USP39Q53GS9 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.63■□□□□ 0.57
USP39Q53GS9 AL121912.1-201ENST00000603683 238 ntBASIC18.63■□□□□ 0.57
USP39Q53GS9 AL390719.2-201ENST00000606993 987 ntBASIC18.63■□□□□ 0.57
USP39Q53GS9 AC023511.2-201ENST00000618803 211 ntBASIC18.63■□□□□ 0.57
USP39Q53GS9 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USP39Q53GS9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.63■□□□□ 0.57
USP39Q53GS9 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.63■□□□□ 0.57
USP39Q53GS9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.63■□□□□ 0.57
USP39Q53GS9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
USP39Q53GS9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USP39Q53GS9 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
USP39Q53GS9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.62■□□□□ 0.57
USP39Q53GS9 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.62■□□□□ 0.57
USP39Q53GS9 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.62■□□□□ 0.57
USP39Q53GS9 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.62■□□□□ 0.57
USP39Q53GS9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.62■□□□□ 0.57
USP39Q53GS9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.62■□□□□ 0.57
USP39Q53GS9 AC099336.1-202ENST00000602961 463 ntBASIC18.62■□□□□ 0.57
USP39Q53GS9 AL353801.3-201ENST00000609898 542 ntBASIC18.62■□□□□ 0.57
USP39Q53GS9 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 AC233702.3-201ENST00000578656 1387 ntBASIC18.62■□□□□ 0.57
USP39Q53GS9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.62■□□□□ 0.57
USP39Q53GS9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP39Q53GS9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.62■□□□□ 0.57
USP39Q53GS9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
USP39Q53GS9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USP39Q53GS9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.61■□□□□ 0.57
USP39Q53GS9 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.61■□□□□ 0.57
USP39Q53GS9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.61■□□□□ 0.57
USP39Q53GS9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 LINC00167-201ENST00000530583 1419 ntBASIC18.61■□□□□ 0.57
USP39Q53GS9 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.61■□□□□ 0.57
USP39Q53GS9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 MIR564-202ENST00000385049 94 ntBASIC18.61■□□□□ 0.57
USP39Q53GS9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.61■□□□□ 0.57
USP39Q53GS9 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.61■□□□□ 0.57
USP39Q53GS9 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.61■□□□□ 0.57
USP39Q53GS9 GUSBP12-201ENST00000513727 720 ntBASIC18.61■□□□□ 0.57
USP39Q53GS9 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
USP39Q53GS9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.61■□□□□ 0.57
USP39Q53GS9 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
USP39Q53GS9 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.61■□□□□ 0.57
USP39Q53GS9 GPR32P1-201ENST00000601788 811 ntBASIC18.61■□□□□ 0.57
USP39Q53GS9 AC006538.3-201ENST00000612495 578 ntBASIC18.61■□□□□ 0.57
USP39Q53GS9 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.61■□□□□ 0.57
USP39Q53GS9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.61■□□□□ 0.57
USP39Q53GS9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
USP39Q53GS9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP39Q53GS9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.6■□□□□ 0.57
USP39Q53GS9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
USP39Q53GS9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP39Q53GS9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP39Q53GS9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
USP39Q53GS9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP39Q53GS9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.6■□□□□ 0.57
USP39Q53GS9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP39Q53GS9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.6■□□□□ 0.57
USP39Q53GS9 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP39Q53GS9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms