Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
FOXA3P55318 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA3P55318 AC022211.2-201ENST00000585075 2527 ntBASIC13.79□□□□□ -0.2
FOXA3P55318 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC13.79□□□□□ -0.2
FOXA3P55318 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC13.79□□□□□ -0.2
FOXA3P55318 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC13.79□□□□□ -0.2
FOXA3P55318 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
FOXA3P55318 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 NKILA-202ENST00000614771 2598 ntBASIC13.79□□□□□ -0.2
FOXA3P55318 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
FOXA3P55318 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC13.79□□□□□ -0.2
FOXA3P55318 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
FOXA3P55318 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA3P55318 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA3P55318 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.78□□□□□ -0.2
FOXA3P55318 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC13.78□□□□□ -0.2
FOXA3P55318 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 AL121906.2-201ENST00000621597 723 ntBASIC13.78□□□□□ -0.2
FOXA3P55318 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 PARP1-210ENST00000629232 477 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
FOXA3P55318 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA3P55318 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA3P55318 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA3P55318 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.2
FOXA3P55318 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA3P55318 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA3P55318 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA3P55318 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
FOXA3P55318 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms