Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 KRT18P22-201ENST00000402024 1347 ntBASIC19.1■□□□□ 0.65
CDH6P55285 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 MIR149-201ENST00000384879 89 ntBASIC19.1■□□□□ 0.65
CDH6P55285 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 AC009947.2-201ENST00000444014 672 ntBASIC19.1■□□□□ 0.65
CDH6P55285 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.1■□□□□ 0.65
CDH6P55285 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 AC145285.6-201ENST00000604632 637 ntBASIC19.1■□□□□ 0.65
CDH6P55285 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.1■□□□□ 0.65
CDH6P55285 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.1■□□□□ 0.65
CDH6P55285 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CDH6P55285 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
CDH6P55285 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.09■□□□□ 0.65
CDH6P55285 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.09■□□□□ 0.65
CDH6P55285 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.09■□□□□ 0.65
CDH6P55285 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CDH6P55285 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.09■□□□□ 0.65
CDH6P55285 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.09■□□□□ 0.65
CDH6P55285 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.09■□□□□ 0.65
CDH6P55285 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.09■□□□□ 0.65
CDH6P55285 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 AC104390.1-201ENST00000555663 520 ntBASIC19.09■□□□□ 0.65
CDH6P55285 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.09■□□□□ 0.65
CDH6P55285 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
CDH6P55285 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CDH6P55285 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CDH6P55285 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CDH6P55285 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDH6P55285 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.09■□□□□ 0.65
CDH6P55285 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDH6P55285 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.08■□□□□ 0.65
CDH6P55285 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.08■□□□□ 0.65
CDH6P55285 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CDH6P55285 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDH6P55285 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDH6P55285 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDH6P55285 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.08■□□□□ 0.65
CDH6P55285 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDH6P55285 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDH6P55285 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDH6P55285 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDH6P55285 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.08■□□□□ 0.64
CDH6P55285 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDH6P55285 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.08■□□□□ 0.64
CDH6P55285 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.08■□□□□ 0.64
CDH6P55285 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 AL512604.3-201ENST00000569583 964 ntBASIC19.08■□□□□ 0.64
CDH6P55285 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.08■□□□□ 0.64
CDH6P55285 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDH6P55285 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CDH6P55285 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CDH6P55285 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.08■□□□□ 0.64
CDH6P55285 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDH6P55285 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.08■□□□□ 0.64
CDH6P55285 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH6P55285 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.07■□□□□ 0.64
CDH6P55285 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH6P55285 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
CDH6P55285 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH6P55285 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH6P55285 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.07■□□□□ 0.64
CDH6P55285 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH6P55285 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CDH6P55285 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.07■□□□□ 0.64
CDH6P55285 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH6P55285 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
CDH6P55285 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH6P55285 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms