Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
CDX1P47902 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.98□□□□□ -0.01
CDX1P47902 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.98□□□□□ -0.01
CDX1P47902 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CDX1P47902 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.98□□□□□ -0.01
CDX1P47902 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CDX1P47902 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 AC097488.1-201ENST00000507834 756 ntBASIC14.98□□□□□ -0.01
CDX1P47902 NAPSB-206ENST00000562112 1266 ntBASIC14.98□□□□□ -0.01
CDX1P47902 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC14.98□□□□□ -0.01
CDX1P47902 AC012306.2-201ENST00000609350 630 ntBASIC14.98□□□□□ -0.01
CDX1P47902 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC14.98□□□□□ -0.01
CDX1P47902 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CDX1P47902 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CDX1P47902 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC14.98□□□□□ -0.01
CDX1P47902 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.98□□□□□ -0.01
CDX1P47902 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CDX1P47902 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDX1P47902 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC14.97□□□□□ -0.01
CDX1P47902 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.97□□□□□ -0.01
CDX1P47902 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.97□□□□□ -0.01
CDX1P47902 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.97□□□□□ -0.01
CDX1P47902 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC14.97□□□□□ -0.01
CDX1P47902 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.97□□□□□ -0.01
CDX1P47902 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.97□□□□□ -0.01
CDX1P47902 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC14.97□□□□□ -0.01
CDX1P47902 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
CDX1P47902 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.97□□□□□ -0.01
CDX1P47902 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.97□□□□□ -0.01
CDX1P47902 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC14.97□□□□□ -0.01
CDX1P47902 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CDX1P47902 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.97□□□□□ -0.01
CDX1P47902 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CDX1P47902 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
CDX1P47902 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CDX1P47902 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CDX1P47902 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC14.96□□□□□ -0.01
CDX1P47902 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CDX1P47902 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.96□□□□□ -0.01
CDX1P47902 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.96□□□□□ -0.01
CDX1P47902 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 FAM207BP-201ENST00000447172 505 ntBASIC14.96□□□□□ -0.01
CDX1P47902 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC14.96□□□□□ -0.01
CDX1P47902 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 Z85996.1-201ENST00000494644 937 ntBASIC14.96□□□□□ -0.01
CDX1P47902 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CDX1P47902 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CDX1P47902 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.96□□□□□ -0.01
CDX1P47902 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC14.96□□□□□ -0.01
CDX1P47902 C2orf69P3-201ENST00000565542 1120 ntBASIC14.96□□□□□ -0.01
CDX1P47902 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.96□□□□□ -0.01
CDX1P47902 AC145285.6-201ENST00000604632 637 ntBASIC14.96□□□□□ -0.01
CDX1P47902 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.96□□□□□ -0.01
CDX1P47902 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDX1P47902 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.96□□□□□ -0.01
CDX1P47902 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms