Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL5A1P20908 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.55■□□□□ 0.4
COL5A1P20908 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL5A1P20908 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.55■□□□□ 0.4
COL5A1P20908 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.55■□□□□ 0.4
COL5A1P20908 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.55■□□□□ 0.4
COL5A1P20908 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.55■□□□□ 0.4
COL5A1P20908 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.55■□□□□ 0.4
COL5A1P20908 AC010327.4-202ENST00000591484 748 ntBASIC17.55■□□□□ 0.4
COL5A1P20908 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.55■□□□□ 0.4
COL5A1P20908 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.55■□□□□ 0.4
COL5A1P20908 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
COL5A1P20908 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL5A1P20908 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.54■□□□□ 0.4
COL5A1P20908 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.54■□□□□ 0.4
COL5A1P20908 AC098831.1-202ENST00000438821 336 ntBASIC17.54■□□□□ 0.4
COL5A1P20908 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.54■□□□□ 0.4
COL5A1P20908 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.54■□□□□ 0.4
COL5A1P20908 OR7E14P-202ENST00000530490 1290 ntBASIC17.54■□□□□ 0.4
COL5A1P20908 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 AC008735.5-201ENST00000623544 497 ntBASIC17.54■□□□□ 0.4
COL5A1P20908 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
COL5A1P20908 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
COL5A1P20908 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
COL5A1P20908 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 RPS2P28-201ENST00000314255 741 ntBASIC17.54■□□□□ 0.4
COL5A1P20908 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.54■□□□□ 0.4
COL5A1P20908 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A1P20908 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
COL5A1P20908 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.54■□□□□ 0.4
COL5A1P20908 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
COL5A1P20908 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.53■□□□□ 0.4
COL5A1P20908 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.53■□□□□ 0.4
COL5A1P20908 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.53■□□□□ 0.4
COL5A1P20908 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
COL5A1P20908 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.53■□□□□ 0.4
COL5A1P20908 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL5A1P20908 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 MED15P5-201ENST00000423150 992 ntBASIC17.53■□□□□ 0.4
COL5A1P20908 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.53■□□□□ 0.4
COL5A1P20908 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL5A1P20908 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.53■□□□□ 0.4
COL5A1P20908 AC012640.2-201ENST00000561606 901 ntBASIC17.53■□□□□ 0.4
COL5A1P20908 Z83851.2-201ENST00000609564 659 ntBASIC17.53■□□□□ 0.4
COL5A1P20908 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.53■□□□□ 0.4
COL5A1P20908 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
COL5A1P20908 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.53■□□□□ 0.4
COL5A1P20908 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A1P20908 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A1P20908 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A1P20908 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A1P20908 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A1P20908 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
COL5A1P20908 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.52■□□□□ 0.4
COL5A1P20908 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A1P20908 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A1P20908 AC005104.2-201ENST00000427818 678 ntBASIC17.52■□□□□ 0.4
COL5A1P20908 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A1P20908 AC068472.1-201ENST00000474589 881 ntBASIC17.52■□□□□ 0.4
COL5A1P20908 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A1P20908 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A1P20908 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A1P20908 AC027601.4-201ENST00000611259 610 ntBASIC17.52■□□□□ 0.4
COL5A1P20908 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A1P20908 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.52■□□□□ 0.4
COL5A1P20908 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A1P20908 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A1P20908 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
COL5A1P20908 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A1P20908 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.52■□□□□ 0.39
COL5A1P20908 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A1P20908 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms