Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 MIR3180-4-201ENST00000582223 153 ntBASIC18.28■□□□□ 0.52
MSH3P20585 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
MSH3P20585 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH3P20585 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 HTR7P1-202ENST00000624664 4411 ntBASIC18.28■□□□□ 0.52
MSH3P20585 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
MSH3P20585 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
MSH3P20585 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.27■□□□□ 0.52
MSH3P20585 AC135050.7-201ENST00000624508 2218 ntBASIC18.27■□□□□ 0.52
MSH3P20585 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH3P20585 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
MSH3P20585 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH3P20585 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.27■□□□□ 0.52
MSH3P20585 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
MSH3P20585 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
MSH3P20585 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 AC126763.1-201ENST00000552015 2118 ntBASIC18.27■□□□□ 0.52
MSH3P20585 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.27■□□□□ 0.52
MSH3P20585 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
MSH3P20585 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MSH3P20585 AL163051.1-201ENST00000569214 1512 ntBASIC18.27■□□□□ 0.51
MSH3P20585 AC026471.1-201ENST00000564629 3026 ntBASIC18.27■□□□□ 0.51
MSH3P20585 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.27■□□□□ 0.51
MSH3P20585 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.27■□□□□ 0.51
MSH3P20585 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MSH3P20585 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
MSH3P20585 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
MSH3P20585 AC104581.1-202ENST00000635932 2618 ntBASIC18.26■□□□□ 0.51
MSH3P20585 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.26■□□□□ 0.51
MSH3P20585 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.26■□□□□ 0.51
MSH3P20585 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
MSH3P20585 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
MSH3P20585 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.26■□□□□ 0.51
MSH3P20585 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 HOMER2P1-201ENST00000455653 964 ntBASIC18.26■□□□□ 0.51
MSH3P20585 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.26■□□□□ 0.51
MSH3P20585 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.26■□□□□ 0.51
MSH3P20585 AL049597.2-201ENST00000565575 961 ntBASIC18.26■□□□□ 0.51
MSH3P20585 LINC01238-205ENST00000567549 1107 ntBASIC18.26■□□□□ 0.51
MSH3P20585 MIR3917-201ENST00000580971 93 ntBASIC18.26■□□□□ 0.51
MSH3P20585 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.26■□□□□ 0.51
MSH3P20585 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.26■□□□□ 0.51
MSH3P20585 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
MSH3P20585 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MSH3P20585 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH3P20585 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
MSH3P20585 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
MSH3P20585 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH3P20585 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH3P20585 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MSH3P20585 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
MSH3P20585 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.25■□□□□ 0.51
MSH3P20585 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.25■□□□□ 0.51
MSH3P20585 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.25■□□□□ 0.51
MSH3P20585 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH3P20585 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
MSH3P20585 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH3P20585 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms