Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.26□□□□□ -0.13
CXCL1P09341 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
CXCL1P09341 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CXCL1P09341 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.25□□□□□ -0.13
CXCL1P09341 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.25□□□□□ -0.13
CXCL1P09341 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CXCL1P09341 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.25□□□□□ -0.13
CXCL1P09341 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 AL136379.1-201ENST00000623471 2642 ntBASIC14.25□□□□□ -0.13
CXCL1P09341 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CXCL1P09341 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.25□□□□□ -0.13
CXCL1P09341 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC14.25□□□□□ -0.13
CXCL1P09341 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC14.25□□□□□ -0.13
CXCL1P09341 AC069236.1-201ENST00000604339 616 ntBASIC14.25□□□□□ -0.13
CXCL1P09341 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.25□□□□□ -0.13
CXCL1P09341 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CXCL1P09341 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.24□□□□□ -0.13
CXCL1P09341 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.24□□□□□ -0.13
CXCL1P09341 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.24□□□□□ -0.13
CXCL1P09341 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.24□□□□□ -0.13
CXCL1P09341 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC14.24□□□□□ -0.13
CXCL1P09341 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC14.24□□□□□ -0.13
CXCL1P09341 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.24□□□□□ -0.13
CXCL1P09341 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC14.24□□□□□ -0.13
CXCL1P09341 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CXCL1P09341 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.24□□□□□ -0.13
CXCL1P09341 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.24□□□□□ -0.13
CXCL1P09341 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 AC068338.2-201ENST00000563278 1430 ntBASIC14.24□□□□□ -0.13
CXCL1P09341 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CXCL1P09341 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CXCL1P09341 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CXCL1P09341 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CXCL1P09341 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CXCL1P09341 AL499627.1-201ENST00000569373 2188 ntBASIC14.23□□□□□ -0.13
CXCL1P09341 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
CXCL1P09341 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
CXCL1P09341 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CXCL1P09341 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms