Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.58■□□□□ 0.4
SEMA3DO95025 NEK4P2-201ENST00000580004 1012 ntBASIC17.58■□□□□ 0.4
SEMA3DO95025 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 AC145285.6-201ENST00000604632 637 ntBASIC17.58■□□□□ 0.4
SEMA3DO95025 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.58■□□□□ 0.4
SEMA3DO95025 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.58■□□□□ 0.4
SEMA3DO95025 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA3DO95025 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.57■□□□□ 0.4
SEMA3DO95025 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SEMA3DO95025 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.57■□□□□ 0.4
SEMA3DO95025 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SEMA3DO95025 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.57■□□□□ 0.4
SEMA3DO95025 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.57■□□□□ 0.4
SEMA3DO95025 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SEMA3DO95025 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SEMA3DO95025 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SEMA3DO95025 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.57■□□□□ 0.4
SEMA3DO95025 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.57■□□□□ 0.4
SEMA3DO95025 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.57■□□□□ 0.4
SEMA3DO95025 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.57■□□□□ 0.4
SEMA3DO95025 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.57■□□□□ 0.4
SEMA3DO95025 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SEMA3DO95025 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 AP000997.3-201ENST00000623333 2250 ntBASIC17.57■□□□□ 0.4
SEMA3DO95025 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SEMA3DO95025 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.57■□□□□ 0.4
SEMA3DO95025 AC020763.4-201ENST00000623414 4170 ntBASIC17.57■□□□□ 0.4
SEMA3DO95025 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA3DO95025 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.56■□□□□ 0.4
SEMA3DO95025 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
SEMA3DO95025 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 AC087499.1-201ENST00000418141 1075 ntBASIC17.56■□□□□ 0.4
SEMA3DO95025 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SEMA3DO95025 AC009947.2-201ENST00000444014 672 ntBASIC17.56■□□□□ 0.4
SEMA3DO95025 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.56■□□□□ 0.4
SEMA3DO95025 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.56■□□□□ 0.4
SEMA3DO95025 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SEMA3DO95025 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SEMA3DO95025 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 NOC2LP1-202ENST00000452600 2235 ntBASIC17.56■□□□□ 0.4
SEMA3DO95025 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SEMA3DO95025 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.56■□□□□ 0.4
SEMA3DO95025 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
SEMA3DO95025 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA3DO95025 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.55■□□□□ 0.4
SEMA3DO95025 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SEMA3DO95025 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 AC093677.2-201ENST00000600169 1863 ntBASIC17.55■□□□□ 0.4
SEMA3DO95025 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA3DO95025 GMCL1P1-201ENST00000463439 1581 ntBASIC17.55■□□□□ 0.4
SEMA3DO95025 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.55■□□□□ 0.4
SEMA3DO95025 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms