Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.09■□□□□ 0.49
SNX3O60493 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.09■□□□□ 0.49
SNX3O60493 AC011270.2-201ENST00000624293 2550 ntBASIC18.09■□□□□ 0.49
SNX3O60493 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 AL138688.1-201ENST00000624851 1594 ntBASIC18.08■□□□□ 0.49
SNX3O60493 AL355312.1-201ENST00000407115 2176 ntBASIC18.08■□□□□ 0.49
SNX3O60493 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX3O60493 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX3O60493 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SNX3O60493 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.08■□□□□ 0.49
SNX3O60493 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
SNX3O60493 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX3O60493 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SNX3O60493 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX3O60493 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX3O60493 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNX3O60493 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNX3O60493 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNX3O60493 AC007322.1-201ENST00000426983 750 ntBASIC18.08■□□□□ 0.48
SNX3O60493 POU5F1P3-201ENST00000428824 1078 ntBASIC18.08■□□□□ 0.48
SNX3O60493 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SNX3O60493 AL162727.3-201ENST00000635661 2787 ntBASIC18.08■□□□□ 0.48
SNX3O60493 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SNX3O60493 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SNX3O60493 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNX3O60493 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.08■□□□□ 0.48
SNX3O60493 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
SNX3O60493 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNX3O60493 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNX3O60493 CROCCP2-202ENST00000412962 2773 ntBASIC18.08■□□□□ 0.48
SNX3O60493 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.07■□□□□ 0.48
SNX3O60493 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SNX3O60493 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SNX3O60493 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.07■□□□□ 0.48
SNX3O60493 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.07■□□□□ 0.48
SNX3O60493 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.07■□□□□ 0.48
SNX3O60493 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.07■□□□□ 0.48
SNX3O60493 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNX3O60493 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.07■□□□□ 0.48
SNX3O60493 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.07■□□□□ 0.48
SNX3O60493 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SNX3O60493 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SNX3O60493 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.06■□□□□ 0.48
SNX3O60493 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SNX3O60493 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms