Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 AC079776.2-201ENST00000641154 1609 ntBASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 AC133561.1-201ENST00000568600 2415 ntBASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 MTCL1P1-201ENST00000446207 792 ntBASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 SLC25A39P2-201ENST00000537614 270 ntBASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 AL353135.1-201ENST00000606729 504 ntBASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 AL662799.1-202ENST00000614205 422 ntBASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC85CA6NKD9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 LINC01521-201ENST00000504184 1943 ntBASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 RPS2P32-201ENST00000439199 892 ntBASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 AL512638.1-201ENST00000457493 794 ntBASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 HILS1-202ENST00000545329 423 ntBASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC85CA6NKD9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
CCDC85CA6NKD9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 AL132655.2-201ENST00000596276 594 ntBASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 AC116407.2-201ENST00000613639 860 ntBASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC85CA6NKD9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 AC006128.1-201ENST00000624704 1661 ntBASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 AC025580.3-201ENST00000617932 1424 ntBASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 IGLL3P-201ENST00000412472 434 ntBASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 AC004945.1-201ENST00000416738 983 ntBASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 U91328.1-201ENST00000437528 223 ntBASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 AC010507.1-201ENST00000633895 436 ntBASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC85CA6NKD9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms