Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 IGHGP-201ENST00000390555 1178 ntBASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 KRT18P41-201ENST00000518924 1277 ntBASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 TPSP2-201ENST00000561760 610 ntBASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 IGHV3-41-201ENST00000613121 348 ntBASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 AL163051.1-201ENST00000569214 1512 ntBASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 DRAXINP1-201ENST00000437611 948 ntBASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 AC090616.6-201ENST00000582640 721 ntBASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.94□□□□□ -0.02
TRAV40A0A0B4J280 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 MIR149-201ENST00000384879 89 ntBASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 TPM4P1-201ENST00000436100 807 ntBASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 AC111152.3-201ENST00000569699 673 ntBASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 AC009102.3-201ENST00000623118 1491 ntBASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRAV40A0A0B4J280 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms