Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA3Q9Y5H0 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 TSSC2-201ENST00000450217 709 ntBASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 SEC1P-202ENST00000473944 940 ntBASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 AC092329.2-201ENST00000598402 547 ntBASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 AC092119.3-201ENST00000612618 583 ntBASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA3Q9Y5H0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 BX276092.5-203ENST00000456199 560 ntBASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 MIR3652-201ENST00000579335 131 ntBASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA3Q9Y5H0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 AL032819.2-201ENST00000624543 2162 ntBASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 AC016734.2-201ENST00000624325 1377 ntBASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.45
PCDHGA3Q9Y5H0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA3Q9Y5H0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA3Q9Y5H0 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.83■□□□□ 0.44
PCDHGA3Q9Y5H0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
PCDHGA3Q9Y5H0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA3Q9Y5H0 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA3Q9Y5H0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA3Q9Y5H0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms