Protein–RNA interactions for Protein: Q9HBX3

SND1-IT1, Uncharacterized protein encoded by SND1-IT1, humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1Q9HBX3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 GAS2L1P1-201ENST00000420145 1480 ntBASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SND1-IT1Q9HBX3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 AC092368.3-202ENST00000574180 1591 ntBASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 MYC-208ENST00000641036 567 ntBASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SND1-IT1Q9HBX3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 MIPEPP3-201ENST00000412105 444 ntBASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC12.31□□□□□ -0.44
SND1-IT1Q9HBX3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms