Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF41Q9H4P4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
RNF41Q9H4P4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.64■■□□□ 1.06
RNF41Q9H4P4 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF41Q9H4P4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF41Q9H4P4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.64■■□□□ 1.06
RNF41Q9H4P4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 AL645929.1-201ENST00000420084 975 ntBASIC21.64■■□□□ 1.05
RNF41Q9H4P4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.64■■□□□ 1.05
RNF41Q9H4P4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 AC005332.1-201ENST00000577698 1310 ntBASIC21.63■■□□□ 1.05
RNF41Q9H4P4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 AL162741.1-201ENST00000565563 1558 ntBASIC21.63■■□□□ 1.05
RNF41Q9H4P4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF41Q9H4P4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 AC090164.3-201ENST00000610780 2143 ntBASIC21.62■■□□□ 1.05
RNF41Q9H4P4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF41Q9H4P4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 PCED1CP-201ENST00000419887 785 ntBASIC21.61■■□□□ 1.05
RNF41Q9H4P4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 LINC01126-201ENST00000623515 1646 ntBASIC21.61■■□□□ 1.05
RNF41Q9H4P4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RNF41Q9H4P4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms