Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 AP002414.4-201ENST00000589764 1148 ntBASIC19.86■□□□□ 0.77
CDT1Q9H211 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CDT1Q9H211 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDT1Q9H211 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDT1Q9H211 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDT1Q9H211 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.86■□□□□ 0.77
CDT1Q9H211 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDT1Q9H211 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDT1Q9H211 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDT1Q9H211 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 AC004408.2-201ENST00000623613 2777 ntBASIC19.85■□□□□ 0.77
CDT1Q9H211 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.85■□□□□ 0.77
CDT1Q9H211 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CDT1Q9H211 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.85■□□□□ 0.77
CDT1Q9H211 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 KRT18P56-201ENST00000507275 550 ntBASIC19.85■□□□□ 0.77
CDT1Q9H211 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.85■□□□□ 0.77
CDT1Q9H211 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.85■□□□□ 0.77
CDT1Q9H211 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.85■□□□□ 0.77
CDT1Q9H211 AC008687.5-201ENST00000593746 558 ntBASIC19.85■□□□□ 0.77
CDT1Q9H211 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.85■□□□□ 0.77
CDT1Q9H211 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CDT1Q9H211 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.85■□□□□ 0.77
CDT1Q9H211 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDT1Q9H211 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.85■□□□□ 0.77
CDT1Q9H211 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.84■□□□□ 0.77
CDT1Q9H211 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CDT1Q9H211 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.84■□□□□ 0.77
CDT1Q9H211 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.84■□□□□ 0.77
CDT1Q9H211 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
CDT1Q9H211 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.84■□□□□ 0.77
CDT1Q9H211 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.84■□□□□ 0.77
CDT1Q9H211 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDT1Q9H211 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.84■□□□□ 0.77
CDT1Q9H211 AL138781.2-201ENST00000617896 1843 ntBASIC19.83■□□□□ 0.77
CDT1Q9H211 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.83■□□□□ 0.77
CDT1Q9H211 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.83■□□□□ 0.77
CDT1Q9H211 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDT1Q9H211 KRT18P1-202ENST00000452408 1331 ntBASIC19.83■□□□□ 0.77
CDT1Q9H211 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDT1Q9H211 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.83■□□□□ 0.77
CDT1Q9H211 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDT1Q9H211 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CDT1Q9H211 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDT1Q9H211 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDT1Q9H211 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.83■□□□□ 0.77
CDT1Q9H211 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDT1Q9H211 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CDT1Q9H211 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.83■□□□□ 0.77
CDT1Q9H211 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDT1Q9H211 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CDT1Q9H211 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.83■□□□□ 0.77
CDT1Q9H211 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.83■□□□□ 0.77
CDT1Q9H211 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDT1Q9H211 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDT1Q9H211 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDT1Q9H211 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.83■□□□□ 0.76
CDT1Q9H211 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDT1Q9H211 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDT1Q9H211 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CDT1Q9H211 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDT1Q9H211 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.83■□□□□ 0.76
CDT1Q9H211 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDT1Q9H211 GMCL1P1-201ENST00000463439 1581 ntBASIC19.83■□□□□ 0.76
CDT1Q9H211 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CDT1Q9H211 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.82■□□□□ 0.76
CDT1Q9H211 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.82■□□□□ 0.76
CDT1Q9H211 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CDT1Q9H211 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.82■□□□□ 0.76
CDT1Q9H211 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
CDT1Q9H211 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.82■□□□□ 0.76
CDT1Q9H211 ESPNP-201ENST00000270691 2015 ntBASIC19.82■□□□□ 0.76
CDT1Q9H211 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDT1Q9H211 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDT1Q9H211 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDT1Q9H211 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDT1Q9H211 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.82■□□□□ 0.76
CDT1Q9H211 TPSP2-201ENST00000561760 610 ntBASIC19.82■□□□□ 0.76
CDT1Q9H211 AC090616.6-201ENST00000582640 721 ntBASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms